groupPlot {ShotgunFunctionalizeR}R Documentation

Plots the result from a direct comparison using the Poisson model

Description

groupPlot plots the result from a direct comparison of two groups. The normalized rate is shown for each sample and the combined rate within each group is shown as a horizontal line. This function requires that the Poisson model has been fitted to the data.

Usage

groupPlot(stat, ...)

Arguments

stat results from a direct comparison using Poisson model
... additional arguments to either trendPlot.family or trendPlot.category

Details

Depending on the supplied data object, groupPlot uses either groupPlot.family or groupPlot.category to produce a plot.

See Also

groupPlot.family, groupPlot.category, trendPlot,trendPlot.family,trendPlot.category

Examples

## Not run: 
data(MouseCOG)
po.stat<-testGeneFamilies.dircomp(MouseCOG, groups=c("Lean", "Lean", "Lean", "Obese", "Obese"))
groupPlot(po.stat, family="COG1662")
## End(Not run)

[Package ShotgunFunctionalizeR version 1.0-1 Index]