testGeneCategories.poisson.fit {ShotgunFunctionalizeR}R Documentation

Fits a Poisson model to data

Description

This is the main function for fitting the Poisson model to one specific gene family category. This function should only be called through testGeneCategories.

Usage

testGeneCategories.poisson.fit(counts, counts.total, gene.families, design.matrix, overdisp=FALSE)

Arguments

counts The counts of all gene families in this specific category. The count should be stored as a vector
counts.total The total number of counts in the data set
gene.families The name of the gene families
design.matrix The design matrix
overdisp Should the quasi-Poisson model with overdispersion be used?

See Also

testGeneCategories.poisson,family


[Package ShotgunFunctionalizeR version 1.0-2 Index]