densityPlot {ShotgunFunctionalizeR} | R Documentation |
Plotting the distribution of counts for a metagenome
Description
densityPlot
plots the probability distribution of the counts for a
metagenome.
Usage
densityPlot(data, sample=1, color.hist="red3", log.yaxis=TRUE, xlim, ylim,
remove.zeros=TRUE, ...)
Arguments
data |
a ShotgunFunctionalizeR data object. |
sample |
a integer indicating which sample that should be plotted.
Defaults to 1. |
color.hist |
the color of the produced histogram |
log.yaxis |
should be y-axis be on a logarithmic scale? Defaults to TRUE |
xlim |
the x limits of the plot |
ylim |
the y limits of the plot |
remove.zeros |
should gene families with zero observation be removed? |
... |
additional arguments for the plot function |
See Also
readGeneFamilies
, plot
Examples
data(OceanCOG)
densityPlot(OceanCOG, sample=1, xlim=c(0,20))
[Package
ShotgunFunctionalizeR version 1.0-2
Index]