testGeneCategories.poisson.fit {ShotgunFunctionalizeR} | R Documentation |
This is the main function for fitting the Poisson model to one
specific gene family category. This function should only be called through
testGeneCategories
.
testGeneCategories.poisson.fit(counts, counts.total, gene.families, design.matrix, overdisp=FALSE)
counts |
The counts of all gene families in this specific category. The count should be stored as a vector |
counts.total |
The total number of counts in the data set |
gene.families |
The name of the gene families |
design.matrix |
The design matrix |
overdisp |
Should the quasi-Poisson model with overdispersion be used? |
testGeneCategories.poisson
,family