ppPlot {ShotgunFunctionalizeR} | R Documentation |
This function plots the observed and theoretical p-value quantiles.
ppPlot(stat, log.pvalues=TRUE, xlim=NULL, ylim=NULL, ...)
stat |
results from any gene- or pathway-centric analysis performed in ShotgunFunctionalizeR |
log.pvalues |
should the p-value be plotted on a logarithmic scale? |
xlim |
x limit of the plot. A suitable value is calculated if omitted |
ylim |
y limit of the plot. A suitable value is calculated if omitted |
... |
additional arguments for qqplot |
qqplot
,
trendPlot
, trendPlot.family
, trendPlot.category
,
groupPlot
,groupPlot.family
,groupPlot.category
## Not run: data(OceanCOG) po.stat<-testGeneFamilies.regression(OceanCOG, covariates=c(10, 70, 130, 200, 500, 770, 4000), log.covariates=T) ppPlot(po.stat) ## End(Not run)