checkFamilyType {ShotgunFunctionalizeR}R Documentation

Checks a consistent annotation from a list of accession numbers

Description

checkFamilyType check that list of accession number are consistently annotated according to the specified gene family type. If not, an error message and the unconsistent rows are returned.

Usage

checkFamilyType(gene.families, type)

Arguments

gene.families list of accession number
type type of gene family to check. Use getSupportedFamilies to get a list of supported families

Value

checkFamilyType returns TRUE if successful.

See Also

glm

Examples

accnos<-c(paste("COG", seq(1000,1005, by=1), sep=""), "EC1.1.1.1")
checkFamilyType(accnos[1:6], "COG")
## Not run: checkFamilyType(accnos, "COG")

[Package ShotgunFunctionalizeR version 1.0-3 Index]