trendPlot {ShotgunFunctionalizeR}R Documentation

Plots the result from a regression analysis using the Poisson model

Description

groupPlot plots the result from a regression analysis. The normalized rate is shown for each sample together with the fitted trend line. This function requires that the Poisson model has been fitted to the data.

Usage

trendPlot(stat, ...)

Arguments

stat results from a regression analysis using Poisson model
... additional arguments to either trendPlot.family or trendPlot.category

Details

Depending on the supplied data object, trendPlot uses either trendPlot.family or trendPlot.category to produce a plot.

See Also

groupPlot, groupPlot.family, groupPlot.category,trendPlot.family,trendPlot.category

Examples

## Not run: 
data(OceanCOG)
po.stat<-testGeneFamilies.regression(OceanCOG, covariates=c(10, 70, 130, 200, 500, 770, 4000), log.covariates=T)
trendPlot(po.stat, family="COG0415")
## End(Not run)

[Package ShotgunFunctionalizeR version 1.0-3 Index]