OceanEC {ShotgunFunctionalizeR}R Documentation

Metagenomes sampled at multiple depth in the Pacific Ocean annotated as EC numbers

Description

This dataset contains metagenomes campled at seven depths (10, 70, 130, 200, 500, 770 and 4000 meters) in the Pacific Ocean. The data was generated by DeLong {it et al.} 2007y Turnbaugh {it et al.} and as annotated as EC numbers using RPS-BLAST.

Usage

OceanEC

Format

A list object with raw metagenomic data from each of the seven depths.

References

DeLong, E.D., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., Martinez, A., Sullivan, M.B., Edwards, R., Brito, B.R., Chisholm, S.W., Karl, D.M. (2006). Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior. {bf 311} pp 496-503.

See Also

MouseCOG, MouseEC, OceanCOG


[Package ShotgunFunctionalizeR version 1.0-3 Index]